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  1. Abhishek Indoliya, Dhruba Dhar, Muktesh Mohan and Raju Poddar. In-vivo analysis of iron-gold composite nanoparticles as potential exogenous contrast agents for magnetomotive optical coherence tomography (MMOCT);; Journal of Magnetism and Magnetic Materials; Volume 514, 2020.
  2. Aggarwal, Y., Das, J., Mazumder, P. M., Kumar, R. and Sinha, R. K. (Accepted) Heart rate variability time domain features in automated prediction of diabetes in rat, Physical and Engineering Sciences in Medicine.
  3. Aggarwal, Y., Das, J., Mazumder, P. M., Kumar, R. and Sinha, R. K. (2020) Heart rate variability features from nonlinear cardiac dynamics in identification of diabetes using artificial neural network and support vector machine, Biocybernetics and Biomedical Engineering, 40: 1002-1009.
  4. Basani, M., Malothu, R., Sinha, R. K. and Murthy, S. V. (2020) Electroencephalogram correlates the role of ashwagandha in sleep and memory promoting effect, Indian Journal of Pharmaceutical Education and Research, 54:xx-xx.
  5. Dutta S, Afreen U, Kumar M, Mukhopadhyay K* (2020) Small RNA in tolerating various biotic stresses. In: Guleria P and Kumar V (ed.) Plant Small RNA, 1st Edition, Biogenesis, Regulation and Application. ELSEVIER BV. Publishing Date: 1st February 2020. DOI: 10.1016/B978-0-12-817112-7.00008-0
  6. Gaggar P, Kumar M, Mukhopadhyay K (2020) Genome-scale identification, in silico characterization and interaction study between wheat SNARE and NPSN gene families involved in vesicular transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2020.2981896
  7. Gidhi A, Kumar M, Mukhopadhyay K (2020) The Auxin Response Factor gene family in wheat (Triticum aestivum L.): Genome-wide identification, characterization and expression analyses in response to leaf rust. South African Journal of Botany. DOI:1 0.1016/j.sajb.2020.06.01
  8. Gupta A., Dev A., Nigam V. K., Padmanabhan P. and Singh S. (2020) A review on Next-Generation Non-Antimicrobials in Orthopedics: Prospects and Concerns.  Nanostructures for antimicrobial and antibiofilm applications, 33-62.
  9. Gupta, A., Padmanabhan, P., & Singh, S. (2020). Resveratrol isomeric switching during bioreduction of gold nanoparticles: a gateway for cis-resveratrol.  Nanotechnology, 31(46), 465603.
  10. Gupta, G. S., Bhatnagar, M., Kumar, S. and Sinha, R. K. (2020) A comparative study of application of different non-conventional filters on electroencephalogram, Biomedical Research, 31:1-9.
  11. Gupta, G. S., Dave, G. B., Tripathi, P. R., Mohanta, D. K., Ghosh, S. and Sinha, R. K. (2021) Brain Computer Interface controlled automatic electric drive for neuro-aid system, Biomedical Signal Processing and Control, 63: 102175.
  12. Gupta, G. S., Mohanta, D. K., Ghosh, S., Dave, G. B., Bhatnagar, M., and Sinha, R. K. (2020) Ocular artifacts elimination and feature extraction in motor imagery based BCI using nonlinear adaptive filter, Biomedical Engineering- Applications, Basis and Communications, 32: 2050015 (1-12).
  13. Jana, P., Shyam, M., Singh, S., Jayaprakash, V., & Dev, A. (2020) Biodegradable Polymers in Drug Delivery and Oral Vaccination. European Polymer Journal, 142, 110155.
  14. Kumari P., Mohan M., Nigam V. K. and Poddar R. (2020) Efficacy of spectroscopic optical coherence tomography (sOCT) for instantaneous study of nitrilase enzyme kinetics. Optik, DOI: 10.1016/j.ijleo.2019.163832.
  15. Kumari R, Bharti B, Pandey DM (2020) Differential expression of some genes and their in-silico analysis in rice varieties under cold stress. Research Journal of Biotechnology. 15(6): 53-66). (UGC Journal: 10447).
  16. Madhyastha, H., Madhyastha, R., Thakur, A., Kentaro, S., Dev, A., Singh, S., ... & Aradhya, A. (2020). c-Phycocyanin primed silver nano conjugates: Studies on red blood cell stress resilience mechanism. Colloids and Surfaces B: Biointerfaces,194, 111211.
  17. Mainak Basu, Raju Poddar    An Amplitude Variation Field Subtraction Technique for visualization of Vasculature of the Human Eye, Biomedical Signal Processing and Control; Volume 54, 101573, 2020.
  18. Mallick, A., Gupta, A., Hussain, A., Aparajay, P., Singh, S., Singh, S. K., & Dev, A. (2020). Intranasal delivery of gabapentin loaded optimized nanoemulsion for augmented permeation. Journal of Drug Delivery Science and Technology56, 101606.
  19. Mukherjee, K., Prasad, M., Mukherjee, S., & Mukherjee, S. (2020). Tossing the word “Social Distancing” to “Human Distancing” for the Betterment of Human Species in Present Pandemic Situation of COVID-19 in India, Ind. J. Pure App. Biosci. 8(3), 58-63. doi: 2845.8072
  20. Muktesh Mohan, Sachin Kumar Maurya, Kaushal Kumar, Raju Poddar, In Vitro Imaging of Animal Tissue with Upconversion Nanoparticles (UCNPs) as a Molecular Probing Agent Using Swept Source Optical Coherence Tomography (SSOCT), Journal of Medical and Biological Engineering, 40, pages 251–263 (2020).
  21. Pandey B, Gupta S, Rao AR, Pandey DM, Chatrath R (2020) Extrapolating the effect of nonsynonymous SNP in bread wheat HSP16.9B gene: a molecular modeling and dynamics study. IJBRA 16(1) 101-116.
  22. Prabha R. and Nigam V. K. (2020) Biotransformation of acrylamide to acrylic acid carried through acrylamidase enzyme synthesized from whole cells of Bacillus tequilensis (BITNR004). Biocatalysis and Biotransformation, DOI:10.1080/10242422.2020.1780211.
  23. Pragya Prakash, Hare Ram Singh, Santosh Kumar Jha. Preparation, Characterization and Application of Curcumin-based Polymeric Bio-composite for Efficient Removal of Endotoxins and Bacterial Cells from Therapeutic Preparations. Journal of Biomaterials Science: Polymer Edition, 2020 (SCI, IF: 2.69).
  24. Prakash P, Singh HR, Jha SK. Indicator dye based screening of glutaminase free L-asparaginase producer and kinetic evaluation of enzyme production process. Preparative biochemistry & biotechnology, 2020. (SCI, IF: 1.415)
  25. Priya Kumari and Raju Poddar, Computational modeling for mutational analysis of nitrilase enzyme towards enhancement of binding empathy, Journal of Biomolecular Structure and Dynamics, DOI: 10.1080/07391102.2020.1747546; 2020.
  26. Qayoom, I., Teotia, A. K., Meena, M., Singh, P., Mishra, A., Singh, S., & Kumar, A. (2020). Enhanced bone mineralization using hydroxyapatite-based ceramic bone substitute incorporating Withania somnifera extracts. Biomedical Materials, 15(5), 055015.
  27. Raju Poddar, Mainak Basu; Characterization and Oxygen Saturation Study of Human Retinal Blood Vessels evaluated by Spectroscopic Optical Coherence Tomography Angiography, Journal Optics & Laser Technology, Volume 122 Pages 105886, 2020.
  28. S. Saha, K.K. Pradhan, S.K. Shukla, H.R. Singh, S.K. Jha. Production and purification of bioflocculants from newly isolated bacterial species: A comparative decolorization study of cationic and anionic textile dyes. Environmental Technology, 2020. 15:1-12. (SCI, IF: 2.13)
  29. Sachin Kumar Maurya, Muktesh Mohan, Raju Poddar, Dulal Senapati, Shweta Singh, Abhijit Roy, Archana Kyalanur Munirathnappa, Joaquim Carlos Gomes Esteves da Silva, and Kaushal Kumar; Synthesis of NaGdF4:Er3+/Yb3+ Upconversion Particles as Exogenous Contrast Agent for Swept-Source Optical Coherence Tomography: In Vitro Animal Tissue Imaging; The Journal of Physical Chemistry C;; 2020.
  30. Sharma R, Ghosh Sachan S, Sharma SR (2020) In vitro analysis of gallstone formation in the presence of bacteria, Indian Journal of Gastroenterology 39: 473-480
  31. Shukla, R. S., Aggarwal, Y., Raut, S. S. and Sinha, R. K. (2020) Unmet need of objective monitor to evaluate performance status in lung cancer patientsIndian Journal of Public Health Research & Development, 11: 98-101.
  32. Shukla, R.S. and Aggarwal, Y. (2021) Fourier Transform and Autoregressive HRV Features in Prediction and Classification of Breast Cancer. IETE Journal of Research (DOI: 10.1080/03772063.2021.1878063).
  33. Singh A, Ghosh Sachan S, Mukhopadhyay K, Kumar M, Sachan A (2020) A rapid and simple ultra-high-performance liquid chromatography method for the simultaneous determination of methoxyphenol derivatives involved in the eugenol catabolic pathway. Journal of Separation Science 43(5): 848-1018. DOI: 10.1002/jssc.201900939
  34. Singh A, Ghosh Sachan S, Mukhopadhyay K, Kumar M, Sachan A (2020) A rapid and simple ultra high performance liquid chromatography method for the simultaneous determination of methoxyphenol derivatives involved in the eugenol catabolic pathway, Journal of Separation Science 43:877-885
  35. Singh S., Banerjee M., Kumar M. (2020) Rhizobium rhizogenes Mediated Hairy Root Transformation and Analysis of Secondary Metabolites in Phlogacanthus thyrsiflorus Nees Hairy Roots using GC-MS. Journal of Scientific & Industrial Research, 79:590-594.
  36. Singh, P., Gupta, A., Qayoom, I., Singh, S., & Kumar, A. (2020). Orthobiologics with phytobioactive cues: A paradigm in bone regeneration. Biomedicine & Pharmacotherapy130, 110754.
  37. Singh, S., Gupta, A., Qayoom, I., Teotia, A. K., Gupta, S., Padmanabhan, P., Dev, A., & Kumar, A. (2020). Biofabrication of Gold Nanoparticles with Bone Remodelling Potential: An In-vitro and In-vivo Assessment. Journal of Nanoparticle Research, 22, 152. 
  38. Soy S., Prabha R. and Nigam V. K. (2020) Potential of Biocatalysis in Pharmaceuticals, Molecular Biotechnology, DOI: 10.5772/intechopen.90459.


  1. S. Chandra, V. Kumar, R. Bandopadhyay, M. M.Sharma, SEM and Elemental Studies of Swertia chirayita: A Critically Endangered Medicinal Herb of Temperate Himalayas. Current Trends in Biotechnology and Pharmacy, 6(2012) 381-388.

  2. D. Singh, G. Bhaganagare, R. Bandopadhyay, K.V. Prabhu, P.K. Gupta, K. Mukhopadhyay, Targeted spatio-temporal expression based characterization of state of infection and time-point of maximum defense in wheat NILs during leaf rust infection, Mol Biol Rep, 39(2012) 9373-9382.

  3. K. Mukherjee, A.K. Bothra, A.S. Vidyarthi, Molecular dynamics simulation of DNA binding domain of hTRF2", Journal of Advanced Bioinformatics Applications and Research, 3(2012) 324-327.

  4. K. Mukherjee, D.M. Pandey, A. S. Vidyarthi, Molecular Dynamics Simulation of Rap1 Myb-type domain in Saccharomyces cerevisiae. Bioinformation, 8(2012) 881-885.

  5. C. Banerjee, P. Gupta, S. Mishra, G. Sen, P. Shukla, R. Bandopadhyay, Study of polyacrylamide grafted starch based algal flocculation towards applications in algal biomass harvesting, International Journal of Biological Macromolecules, 51(2012) 456-461.

  6. R.S. Thakur, R. Bandopadhyay, B. Chaudhary, S. Chatterjee, Now And Next Generation Sequencing Techniques: Future of Sequence Analysis using Cloud Computing. Frontiers in Genetics, 3(2012) 280.

  7. P. Gupta, R.S. Singh, A. Sachan, A.S. Vidyarthi, A. Gupta, A re-appraisal on intensification of biogas production. Renewable & Sustainable Energy Reviews, 16(2012) 4908-4916.

  8. A. Rajvanshi, V.K. Nigam, S. Kulshreshtha, R.P. Pareek, Characterization of bacteriocin production from a new lactic acid bacteria. World journal of pharmacy and pharmaceutical sciences, 1(2012) 1100-1112.

  9. A. Agarwal, V.K. Nigam, A.S. Vidyarthi, Nitrilases – an attractive nitrile degrading biocatalyst, International Journal of Pharma and Bio Sciences, 3(2012) 232-246.

  10. V. K. Nigam, A. K. Khandelwal, A. Agarwal, M. K. Mohan, A. S. Vidyarthi, Production of a Thermostable Nitrilase in a Lab Scale Stirred Tank Bioreactor, International Journal of Bio-Science and Bio-Technology, 4(2012) 81-90.

  11. S. K. Jha, D. Pasrija, R.K. Sinha, H.R. Singh, V.K. Nigam, A.S. Vidyarthi, Microbial l-asparaginase: a review on current scenario and future prospects, Journal of Pharmaceutical Sciences and Research, 3(2012) 3076-3090.

  12. A. Rajvanshi, S. Kulshrestha, V.K. Nigam, R.P. Pareek, Preventive effect of L. mesenderoides used as probiotic agent in vivo, Indian Journal of Animal Research, 46(2012) 385-388.

  13. S. Nallapeta, V.K. Nigam, P. Survajahala, K. Mohan, Screening and selection of white rot fungi for biological delignification of agricultural residues, International Journal of Advanced Biotechnology and Research, 3(2012) 790-796.

  14. A. Katiyar, S. Smita, V. Chinnusamy, D.M. Pandey, K.C. Bansal, Identification of miRNAs in sorghum by using bioinformatics approach, Plant Signaling & Behavior, 7(2012) 001 – 014.

  15. B. Pandey, P. Sharma, D.M. Pandey, J. Varshney, S. Sheoran, M. Singh, R. Singh, I. Sharma, R. Chatrath, Comprehensive computational analysis of different classes of Glutathione S-transferases in Triticum aestivum L., Plant Omics Journal, 5(2012) 518-531.

  16. A. Kumari, A. Kumar, A. Wany, G.K. Prajapati, D.M. Pandey, Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs, Bioinformation, 8(2012) 1211-1219.

  17. B. Chaudhary, K. Mukhopadhyay, Solvent optimization for anthocyanin extraction from Syzygium cumini L. Skeels using response surface methodology, International Journal of Food Sciences and Nutrition, (2012). (Accepted)

  18. C. Banerjee, R. Bandopadhyay, P. Shukla, A simple novel agar diffusion method for isolation of indigenous microalgae Chlamydomonas sp. CRP7 and Chlorella sp. CB4 from operational swampy top soil, Indian J Microbiol, (2012) (Accepted)

  19. C. Banerjee, S. Ghosh, G. Sen, S. Mishra, P. Shukla, R. Bandopadhyay, Study of algal biomass harvesting using cationic guar gum from the natural plant source as flocculant. Carbohydrate Polymers, (2012) (Accepted).

  20. W. Kong, H. Jin, C.D. Franks, C. Kim, R. Bandopadhyay, M.K. Rana, S.A. Auckland, V.H. Goff, L.K. Rainville, G.B. Burow, C. Wood?n, J.J. Burke, A.H. Paterson, Genetic Analysis of Recombinant Inbred Lines for Sorghum bicolor · Sorghum propinquum, G3: Genes| Genomes| Genetics, 3(2013) 101-108.

  21. S. Smita, A. Katiyar, D.M. Pandey, V. Chinnusamy, S. Archak, K.C. Bansal, Identification of conserved drought stress responsive gene-network across tissues and developmental stages in rice, Bioinformation, 9(2013) 72-78.

  22. A. Kumari, A. Kumar, D.M. Pandey, In silico analysis of some least studied transcription factors/regulators in rice during abiotic stress, International Journal of Computational Bioinformatics and In Silico Modeling, 2(2013) 72-80.

  23. D.M. Pandey, A.S. Vidyarthi, V.K. Nigam, D. Prasad, R. Ramani, B.C. Prasad, R. Das, A. Kumar, G.K. Prajapati, A. Kumari, A. Wany, Meeting report: International symposium on plant biotechnology towards tolerance to stresses and enhancing crop yield (ISPB-2011), Current Research in Microbiology and Biotechnology, 1(2013) 16-22.

  24. B. Pandey, O.P. Gupta, D.M. Pandey, I. Sharma, P. Sharma, Identification of new microRNAs and their targets in wheat using computational approach, Plant Signaling & Behavior, 8(2013) e23932.

  25. A. Ahmad, K. K. Sharma, V. V. Ramamurthy, A. S. Vidyarthi, R. Ramani, Three new species of Kerria (Hemiptera: Sternorrhyncha: Coccoidea: Tachardiidae), a redesciption of K. yunnanensis Ou & Hong, and a revised key to species of Kerria Zootaxa 3620 (4), (2013),  518–532.

  26. D. Jabin, A.S. Vidyarthi, Shankaracharya, In silico analysis of flavopiridol analogues with Cdk2 in cancer therapy. Online J Bioinformatics. 14 (1), (2013),  1-8.

  27. M. Mallick, D. Odedra, A.S. Vidyarthi, Shankaracharya, Meropenem: A potent drug against superbug as unveiled through bioinformatics approaches. Int. J. Bioinformatics Research and Applications. 9(2), (2013), 109-120.


  1. S. Banerjee, S. Singh, S. Tikariha, A.S. Vidyarthi, A review on biological synthesis of gold nanoparticles and its applications, Pharmbit, Vol. XXIII & XXIV(2011) 11-17.

  2. S. Shrivastava, P. Shukla, K. Mukhopadhyay, Purification and preliminary characterization of a xylanase from Thermomyces lanuginosus strain SS-8, 3 Biotech, 1(2011) 255-259.

  3. D. Sahu, A. Kumar, D.M. Pandey, In silico analysis of enzyme involved in enrichment of citronella oil, Int. J. Computational Biology and Drug Design, 4(2011) 332-344.

  4.  K. Mukherjee, A. Kumar, D.M. Pandey, A.S. Vidyarthi, Study of Rice Telomere Binding Protein 1 (Rtbp1): An In Silico Approach, Int. J. Pharm. Sci. Review Res., 10(2011) 193-197.

  5. M. Mallick, K. Mukherjee, N.A. Udayakumar, Homology Modelling of Polyphenol Oxidase from Solanum Melongen: Sequence analysis and Structural validation studies – In Silico, International Journal of Pharma and Bio Sciences, 2(2011) 319-328.

  6. A. Kumar, A. Barik, M. Kumari, A.S. Vidyarthi, D.M. Pandey, In silico prediction and identification of anoxia responsive single exon genes and their expressed proteins in rice (Oryza sativa L.), Int. J. Bioinformatics Research and Applications, 7(2011) 376-389.

  7. T. Destro, D. Prasad, D. Martignago, I.L. Bernet, A.R. Trentin, I.K. Ranu, M. Ferretti, A. Masi, Compensatory expression and substrate inducibility of g-glutamyl transferase GGT2 isoform in Arabidopsis thaliana, Journal of Experimental Botany, 62(2011) 805-814.

  8. S. Vijayvargiya, P. Shukla, A Genetic Algorithm with Clustering for Finding Regulatory Motifs in DNA Sequences. International Journal of Computer Applications. IJCA Special Issue on “Artificial Intelligence Techniques - Novel Approaches & Practical Applications, 1(2011) 6-10.

  9. C. Banerjee, R. Bandopadhyay, P. Shukla, Microalgal biofuel towards sustainable development: promises and technologies for future, International Journal of Advanced Biotechnology and Research, 2(2011) 481-483.

  10.  M. Mallick, A.S. Vidyarthi, Shankaracharya, (2011) Tools for predicting metal binding Sites in Protein: A Review, Current Bioinformatics, 6(4): 444-449.

  11. D. Jabin, A.S. Vidyarthi, Shankaracharya, Pharmacoinformatics of virtual inhibitor for Cdc2 analogues, Online J Pharmacol Kinetics, 7(2011) 24-31.

  12. N. Chauhan, A.S. Vidyarthi, R. Poddar, Comparative multivariate analysis of codon and amino acid usage in three Leishmania genomes, Genomics Proteomics Bioinformatics, 9(2011) 218-228.

  13. S.K. Ranjan, C.B. Mallick, D. Saha, A.S. Vidyarthi, R. Ramani, Genetic variation among species, races, forms and inbred lines of lac insects belonging to the genus Kerria (Homoptera, Tachardiidae), Genetics and Molecular Biology, 34(2011) 511-519.

  14. A. Shukla, A.S. Vidyarthi, S. Samanta, Computer Aided Drug Design and Studies of Antiviral Drug against H3N2 Influenza Virus, World Academy of Science Engineering & Technology, 59(2011) 45-48.

  15. R. Bandopadhyay, A Botanist in 2011 Southern Ocean Expedition, Pallav, 6(2011) 70-72.

  16. P. Shukla, R. Bandopadhyay, V. Kumar, C. Banerjee, A Report on the ‘51st Annual Conference of Association of Microbiologists of India (AMI) (December 14–17, 2010; Venue: Birla Institute of Technology, Mesra, Ranchi, India), Indian J Microbiol, 51(2011) 537-538.

  17. R. Bandopadhyay, Wheat Chromosome Mapping: An Overview. Perspective in Cytology and Genetics, 15(2012) 199-204.

  18. R. Bandopadhyay, P. Sinha, B. Chaudhary, Is Bt-brinjal ready for future food?-A critical study, Indian Journal of Biotechnology, 11(2012) 238-240.

  19. A. Ahmad, S. Kaushik, V.V. Ramamurthy, S. Lakhanpaul, R. Ramani, K.K. Sharma, A.S. Vidyarthi, Mouthparts and stylet penetration of the lac insect Kerria lacca (Kerr) (Hemiptera:Tachardiidae), Arthropod Structure and Development, 41(2012) 435-441.

  20. P.K. Singh, P. Shukla, Molecular modeling and docking of microbial inulinases towards perceptive enzyme-substrate interactions, Indian Journal of Microbiology, 52(2012) 373-380.

  21. S. Tikariha, S. Singh, S. Banerjee, A.S. Vidyarthi, Biosynthesis of gold nanoparticles, scope and applications: A review, Int. J. Pharm. Sci. & Rsch., 3(2012) 1603-1615.

  22. R. Sharma, A. Kumar, N.K. Jha, S. Ghosh Sachan, A.S. Vidyarthi, S.R. Sharma, Probing into the prevalance and factors of gallstones formation in Jharkhand region in India, International Journal of Applied Biology and Pharmaceutical Technology, 3(2012) 36-41. 

  23. P. Singhal, V.K. Nigam, A.S. Vidyarthi, Studies on Production, Characterization and Applications of Microbial Alkaline Proteases, International Journal Of Advanced Biotechnology and Research, 3(2012) 653-669.

  24. Shankaracharya, D. Odedra, S. Samanta, A.S. Vidyarthi, Computational intelligence-based diagnosis tool for the detection of prediabetes and type 2 diabetes in India. Rev Diabet Stud, 9(2012) 55-62. 

  25. S. Chandra, Endophytic fungi: novel sources of anticancer lead molecules, Applied Microbiology and Biotechnology, 95(2012) 47-59. 

  26. S. Vijayvargiya, P.Shukla, A niched Pareto genetic algorithm for finding variable length regulatory motifs in DNA sequences, 3Biotech, 2(2012) 141-148.

  27. M.V.K. Karthik, M.V.K.N. Satya Deepak, P. Shukla, Explication of interactions between HMGCR isoform 2 and various statins through In silico modeling and docking, Computers in Biology and Medicine, 42(2012) 156-163.

  28. N. Chauhan, A.S. Vidyarthi, R. Poddar, Comparative Analysis of Different DNA Binding Drugs for Leishmaniasis Cure: A Pharmacoinformatics Approach, Chemical Biology & Drug Design, 80(2012) 54-63.

  29. S. Chandra, Natural plant genetic engineer Agrobacterium rhizogenes: role of T-DNA in plant secondary metabolism, Biotechnol Lett, 34(2012) 407-415.

  30. B. Chaudhary, K. Mukhopadhyay, Induction of anthocyanin pigment in callus cultures of Solanum melongena L. in response to plant growth regulators and light, B. IOSR Journal of Pharmacy 2(2012) 76-80.

  31. B. Chaudhary, K. Mukhopadhyay, Syzygium Cumini (L.) Skeels: A potential source of nutraceuticals, International Journal of Pharmacy and Biological Sciences, 2(2012) 46-53.

  32. K. Mukhopadhyay, I. Haque, R. Bandopadhyay, S. Covert, D. Porter, AFLP based assessment of genetic relationships among shiitake (Lentinula ssp.) mushrooms, Molecular Biology Reports, 39(2012) 6059-6065.

  33. P. Gupta, R.S. Singh, A. Sachan, A.S. Vidyarthi, A. Gupta, N. Tripathi, Study on biogas production by anaerobic digestion of garden-waste, Fuel, 95(2012)  495-498.

  34. Shankaracharya, D. Odedra, M. Mallick, P. Shukla, S. Samanta, A.S. Vidyarthi, Java based diabetes type-2 prediction tool for better diagnosis, Diabetes Technol Ther., 14(2012) 251-256. 

  35. A. Mathur, Shankaracharya, A.S. Vidyarthi, SWIFT MODELLER v2.0: A platform independent GUI for homology modeling, J Mol Model, 18(2012) 3021-3023.

  36. A. Katiyar, S. Smita, D.M. Pandey, V. Chinnusamy, K.C. Bansal, Identification of miRNAs in sorghum by using bioinformatics approach, Plant Signaling & Behavior, 7(2012) 1-14.

  37. S. Goswami, A. Rani, R. Priyadarshini, B. Bhunia, T. Mandal, A Review on Production of Echinocandins by Aspergillus sp. Journal of Biochemical Technology, (2012). (Accepted)

  38. B. Bhunia, D. Mukhopadhy, S. Goswami, T. Mandal, A. Dey, Improved production, characterization and flocculation properties of poly (g)-glutamic acid produced from Bacillus subtilis. Journal of Biochemical Technology, (2012). (Accepted)

  39. T. Mandal, P. Palit, S. Goswami, D. Mukhopadhy, B. Bhunia, Characterization methods of Bacteria, Pharmawave, (2012). (Accepted)


  1.  B.A. Sadanand, K. Kanhaiya, R. Poddar, Molecular Evolution of Virulence Genes of Swine Influenza Virus Subtype-A H1N1 : an analysis of host radiation, International Journal of Pharma and Bio Sciences, 2(2010) 169-180.

  2. N. Singh, T.T.M. Dang, G.V. Vergara, D.M. Pandey, D. Sanchez, C.N. Neeraja, E.M. Septiningsih, M. Mendioro, E.M. Tecson-Mendoza, A.M. Ismail, D.J. Mackill, S. Heuer, Screening for novel sources of submergence tolerance using gene-based Sub1 molecular markers, Theoretical and Applied Genetics, 121(2010) 1441-1453.

  3. A.K. Khandelwal, V.K. Nigam, A.S. Vidyarthi, P. Ghosh, Evaluation of various ions and compounds on nitrilase produced from Streptomyces sp., Artificial Cells, Blood substitutes & Biotechnology, 38(2010) 13-18.

  4. A.Rizal, A. Kumar, A.S. Vidyarthi, Prevalence of Pathogenic Genes in Campylobacter jejuni Isolated from Poultry and Human, Internet Journal of Food Safety, 12(2010) 29-34.

  5. Shankaracharya, S. Das, D. Prasad, A.S. Vidyarthi, Theoretical Investigations on Structure and Function of Human Homologue hABH4 of E. coli ALKB4, IBC Interdisciplinary Bio Central, (2010) doi:10.4051/ibc.2010.2.3.0008.

  6. Shankaracharya, Priyamvada, A.S. Vidyarthi, In silico prediction of D-HSCDK2 structure and its docking study with Flavopiridol analogues, Journal of Chemical and Pharmaceutical Research, 2(2010) 329-337.

  7. K. Mukherjee, A.K. Bothra, A.S. Vidyarthi, Comparison of global and local motional properties of human telomere repeat binding factor (hTRF2) in vacuum and water, Journal of Chemical and Pharmaceutical Research, 2(2010) 587-592.

  8. Shankaracharya, Priyamvada, A.S. Vidyarthi, Pharmaco-inforamtics: Modeling of Human CDCP2 homolog structure and its docking study with Flavopiridol analogs, International Journal of Pharmaceutical Sciences Review and Research, 4(2010)1-6.

  9. Shankaracharya, Priyamvada, A.S. Vidyarthi, Structural Modeling of Human CDK4 and its Docking Study With Flavopiridol Analogues, Pharmabit, 21(2010) 99-105.

  10. Shankaracharya, D. Odedra, S. Samanta, A.S. Vidyarthi, Computational Intelligence in Early Diabetes Diagnosis: A Review, The Review of Diabetic Studies, 7(2010) 248-258.

  11. R. Ramprasad, R. Bandopadhyay, Future of Ricinus communis after the completion of draft genome sequence, Current Science, 99(2010) 1316-1318.

  12. A.Mathur, Shankaracharya, A.S. Vidyarthi, Swift Modeller: A java based GUI for molecular modeling, Journal of Molecular Modelling, (2011) DOI: 10.1007/s00894-011-0960-4.

  13. Shankaracharya, S. Das, A.S. Vidyarthi, Structure and function prediction of human homologue hABH5 of E. coli ALKB5 using in silico approach, Nature Precedings, (2011) doi | 10.1038/npre.2011.5597.1

  14. Shankaracharya, S. Das, A.S. Vidyarthi, Molecular modelling and Function Prediction of hABH7, human homologue of E. coli ALKB7. Nature Precedings, (2011) hdl:10101/npre.2011.5841.1.

  15. Shankaracharya, S. Das, A.S. Vidyarthi, Homology Modeling and Function Prediction study of hABH1, Involve in repair of alkylation-damaged DNA, Interdisciplinary Sciences: Computational Life Sciences, 3(2011) 1-7.

  16. P. Jyoti, A.S. Vidyarthi, Shankaracharya, In-silico discovery of Inhibitors against telomerase associated proteins, Online Journal of Bioinformatics, 12(2011) 243-254.

  17. P. Parashar, S.K. Singh, A.K. Dubey, H.R. Singh, G.N. Trivedi, Changes in salivary and seminal ascorbic acid level in men of different Body Mass Index (BMI) range groups, Journal of Experimental Zoology, India, 14(2011) 249-251.

  18. D. Odedra, M. Mallick, A.S. Vidyarthi, Shankaracharya, Comparative Evolutionary Analysis of Metallo-β-Lactamases with Reference to NDM1, Online Journal of Bioinformatics, 12(2011) 18-33.

  19. D. Prasad, Shankaracharya, A.S. Vidyarthi, Gold nanoparticles (GNPs) based colorimetric assay for rapid detection of Salmonella species in food samples, World Journal of Microbiology and Biotechnology, 27(2011) 2227-2230.

  20. A.K. Singh, P. Shukla, In silico analysis of antibiotic producing actinomycetes communities and their relatedness towards antimicrobial activities, Journal of Advanced Bioinformatics Applications and Research, 2(2011) 130-134.

  21. P. Shukla, J. Bhagat, S. Shrivastava, Oil cakes as substrate for improved lipase production in solid state fermentation, International Journal of Microbiology Research, 3(2011) 71-73.

  22. S. Vijayvargiya, P. Shukla, Identification of transcription factor binding sites in biological sequences using genetic algorithm, International Journal of Research and Reviews in Computer Science (IJRRCS), 2(2011) 561-565.

  23. S. Vijayvargiya, P. Shukla, A Structured Evolutionary Algorithm for Identification of Transcription Factor Binding Sites in Unaligned DNA Sequences, International Journal of Advancements in Technology, 2(2011) 100-107.

  24. M.V.K Karthik, P. Shukla, Rational enzyme design towards substrate stabilization in family 11 xylanases from Thermomyces lanuginosus, Online Journal of Bioinformatics (OJB), 12(2011) 107-114.

  25. R. Bandopadhyay, S. Rustgi, R. K. Chaudhuri, P. Khurana, J.P. Khurana, A.K. Tyagi, H.S. Balyan, A. Houben, P. K. Gupta, Use of methylation filtration and Cot fractionation for analysis of genome composition and comparative genomics in bread wheat, Journal of Genetics and Genomics, 38(2011) 315-325.

  26. S. Kumar, J. Pathak, Asha, R. Bandopadhyay, Inhibition of Farnesyl pyrophosphate by allosteric site drug binding, Online Journal of Bioinformatics, 12(2011) 57-65.

  27. S. Chandra, R. Chandra, Engineering secondary metabolite production in hairy roots, Phytochemistry Reviews, 10(2011) 371-395.

  28. S. Kumar, C.K. Singh, R. Bandopadhyay, Wheat genome sequence: challenges and success. Current Science, 100(2011) 455-457.

  29. R. Sinha, A.S. Vidyarthi, Shankaracharya, A Molecular Docking study of Paclitaxel and its Analogues, Indian Journal of Biochemistry and Biophysics, Niscair Journal, 48(2011) 188-195.

  30. A.K. Singh, A.S. Vidyarthi, Shankaracharya, Codon Usage pattern of differentially expressed genes in Leishmania species. Indian J. Biotechnology, 10(2011) 101-105.



  1. I.Haque, M. Kumar, K. Mukhopadhyay, A Rapid and Simple UPLC-MS-MS based Simultaneous Determination of the Medicinally Important E- and Z-Guggulsterone from Oleo-Gum Resins of Naturally Occurring Commiphora wightii Plants, Chromatographia, 70(2009) 1613-1619.

  2. H.R. Singh, R.R. Singh, A.K. Dubey, S.K. Jha, A.S. Vidyarthi, Effect of Intravaginal Neem oil treatment on Uterine Total Phosphorus Level in Albino rats, Journal of Experimental Zoology, India, 12(2009) 391-393.

  3. S. Rustgi, R. Bandopadhyay, H.S. Balyan, P.K. Gupta, EST-SNPs in Bread Wheat: Discovery, Validation, Genotyping and Haplotype Structure, Czech J. Genet. Plant Breed., 45(2009) 106-116.

  4. S. Shrivastava, P. Shukla, K. Mukhopadhyay, R. Poddar, Study of codon bias perspective of fungal xylanase gene by multivariate analysis, Bioinformation, 3(2009).

  5. R. Poddar, A. Mathur, O.U. Kawalekar, A. Rai, A. Bhatnagar, Modifications of ampicillin structure and its implication: an in-silico approach, Int. J. Bioinf. Res. Appl., 5(2009) 616- 624.

  6. I.Haque, R. Bandopadhyay, K. Mukhopadhyay, Intraspecific Variation in Commiphora wightii Populations Based on Internal Transcribed Spacer (ITS1- 5.8S-ITS2) Sequences of rDNA, Diversity, 1(2009) 89-101.

  7. H.R. Singh, R.R. Singh, A.K. Dubey, S.K. Jha, A.S. Vidyarthi, Study of Ovarian and Uterine Ascorbic Acid Level after Intravaginal Neem Oil treatment in Albino rat, PHARMBIT, XX(2009) 154-157.
    A. Kumar, S. Smita, N. Sahu, V. Sharma, Shankaracharya, A.S. Vidyarthi, D.M. Pandey, In silico analysis of Motifs in Promoter of Differentially Expressed Genes in Rice (Oryza sativa L) under Anoxia, Int. J. Bioinf. Res. Appl., 5(2009) 525-547.

  8. Z. Meng, P. Shukla, M. Ayyachamy, K. Permaul, S. Singh, Improved bioethanol production through simultaneous saccharification and fermentation of lignocellulosic agricultural wastes by Kluyveromyces marxianus 6556, World J. Microbiol. Biotechnol., 26(2010) 1041-1046.

  9. I.Haque, R. Bandopadhyay, K. Mukhopadhyay, Population genetic structure of the endangered and endemic medicinal plant Commiphora wightii, Mol. Biol. Rep., 37(2010) 847-854.

  10. A.Sachan, S. Ghosh, A. Mitra, Transforming p-coumaric acid into p-hydroxybenzoic acid by the mycelial culture of a white rot fungus Schizophyllum commune, Afr. J Microbiol Res., 4(2010) 267-273.

  11. P. Gupta, R.S. Singh, A. Sachan, A.S. Vidyarthi, A. Gupta, N. Tripathi, Study on Biogas Production from Vegetable Waste Indigenous Microbes, Int. J. Appl. Env. Sci., 5(2010) 169-178.

  12. Shankaracharya, B. Srivastava, A.S. Vidyarthi, Structure modeling of VRK1 Protein and Its Molecular Docking study with Ribavirin analogs, Int. J. Pharma and BioSciences, 1(2010) 1-10.

  13. Shankaracharya, P. Sharma, A.S. Vidyarthi. Homology Modeling of Tubulin β-1 chain and its Docking study with Colchicine Analogs, Int. J. Pharm. and Technol., 3(2010) 515-530.

  14. V. Kumar, A. Badve, S. Das, S. Ghosh, R. Bandopadhyay, The 2009 Nobel prize in chemistry: for studies of the Structure and function of the ribosome. Int. J. Appl. Biol. Pharma. Technol., 1(2010) 95-103.

  15. S. Chandra, R. Bandopadhyay, V. Kumar, R. Chandra, Acclimatization of tissue cultured plantlets: from laboratory to land, Biotechnol. Lett., 32(2010) 1199-1205.


  1. S. Sharma, A.S. Vidyarthi, R. Poddar, Analysis of Synonymous Codon Usage Bias in Pseudomonas syringae Phages: Implication in Phage Therapy for Halo Blight Disease, Journal of Proteomics & Bioinformatics, 1(2008) 206-18.

  2. I. Haque, R. Bandopadhyay, K. Mukhopadhyay, An optimized protocol for fast genomic DNA isolation from high secondary metabolites and gum containing plants, Asian Journal of Plant Sciences, 7(2008) 304-308.

  3. S. Shrivastava, P. Shukla, K. Mukhopadhyay, Correlative characterization of changes in hyphal morphology during xylanase production in submerged culture by Thermomyces lanuginosus SS-8, Internet Journal of Microbiology, 4(2008).

  4. P. Shukla, D. Garai, Mohd. Zafar, K. Gupta, S. Shrivastava, Process Parameters Optimization for Lipase Production by Rhizopus Oryzae Kg-10 under Submerged Fermentation using Response Surface Methodology, Journal of Applied Sciences in Environmental Sanitation, 2(2008) 93-103.

  5. D. M. Pandey, U-D Yeo, Stress-induced degradation of D1 protein and its photoprotection by DCPIP in isolated thylakoid membranes of barley leaf, Biologia Plantarum, 52(2008) 291-298.

  6. G-S Eu, B.Y. Chung, R. Bandopadhyay, N-H Yoo, D-G Choi, S. J. Yun, Phylogenic Relationships of Rubus Species Revealed by Randomly Amplified Polymorphic DNA Markers, J. Crop Sci. Biotech. 11 (2008) 39-44.

  7. D. Prasad, A. S. Vidyarthi, DNA based methods used for characterization and detection of food borne bacterial pathogens with special consideration to recent rapid methods, African Journal of Biotechnology, 8(2009) 1768-1775.

  8. D.M. Pandey, I. Choi, U-D Yeo, Photosystem 2-activity and thylakoid membrane polypeptides of in vitro cultured chrysanthemum as affected by NaCl, Biologia Plantarum, 53(2009) 329-333.

  9. V.K. Nigam, A.K. Khandelwal, R.K. Gothwal, M.K. Mohan, B. Choudhury, A.S. Vidyarthi, P. Ghosh, Nitrilase-catalysed conversion of acrylonitrile by free and immobilized cells of Streptomyces sp. Journal of Biosciences, 34(2009) 21-26.

  10. S. Ganguly, A. Kumar, R. Chandra, Synthesis and antifungal evaluation of some 1- substituted azoles, Pharmbit (An International Journal), XVIII(2009) 105-107.
    11. P. Shukla, S. Dutta, N. Kango, Isolation of Actinomycetes from Various Soil Samples of Ranchi District (Jharkhand) and Studies on their Antimicrobial Activities, Hindustan Antibiotics Bulletin, Official Journal of HAL, Govt of India, 49-50(2008) 5-9.

  11. A. Ranjan, A. S. Vidyarthi, R. Poddar, Codon bias perspectives in phage therapy of Mycobacterium tuberculosis, In silico Biology, 7(2007) 21-30.

  12. P. Shukla, K. Sharma, N. Kango, Production of lipase by hyper-lipolytic Rhizopus oryzae KG-10 on low-value oil emulsions, Research Journal of Microbiology, 2(2007) 671-677.

  13. P. Shukla, K. Sharma, Ecological Screening For Lipolytic Molds And Process Optimization For Lipase Production From Rhizopus oryzae KG-5, Journal of Applied Sciences in Environmental Sanitation, 2(2007) 35-42.

  14. S. Shrivastava, P. Shukla, R. Poddar, In Silico Studies for Evaluating Conservation Homology among Family 11 Xylanases from Thermomyces lanuginosus, Journal of Applied Sciences in Environmental Sanitation, 2(2007) 70-76.

  15. B. Samyukta, A. Singh , P. Shukla, An Insight overview of Lysosomal Enzymes and their Biological significance, PHARMBIT, An International Journal, XVI.(2007).

  16. Bandopadhyay, K. Mukhopadhyay, C. Lavanya, R.K. Chaudhuri, Clarity in castorbean RAPD profiles after mild NaOH treatment of genomic DNAs, Journal of Botanical Society of Bengal, 61(2007) 153-156.

  17. R. Poddar, S.R. Sharma, P. Sen, J.T. Andrews, Possible correlation between blood glucose concentration and scattering coefficients in Human Blood using Optical Coherence Tomography, Current Science, 95(2008) 340-344.


  1. R. Poddar, S.R. Sharma, P. Sen, J.T. Andrews, Effect of glucose concentration on scattering coefficients in blood like Turbid Media using diffuse reflectance, International Journal of Biotechnology & Biochemistry (IJBB), 2(2006) 31-35.

  2. R. Kumar, P. Halder, R. Poddar, Adaptive molecular evolution of virulence genes of avian influenza - A virus subtype H5N1: An analysis of host radiation, Bioinformation, 1(2006) 321-326. 


  1. K. Phadwal, Carotenoid biosynthetic pathway: molecular phylogenies and evolutionary behavior of crt genes in eubacteria, Gene, 345(2005) 35-43.