RESEARCH PUBLICATIONS:
International Peer Reviewed Journals & Contributary Book Chapters
2024
Afreen U, Kumar M, Mukhopadhyay K* (2024) Unraveling the role of microRNA-like RNAs in enhancing Puccinia triticina pathogenicity in wheat by high-throughput sequencing data. Physiological and Molecular Plant Pathology
Dhandhanya UK, Mukhopadhyay K, Kumar M (2024) An accretive detection method for in silico identification and validation of circular RNAs in wheat (Triticum aestivum L.) using RT?qPCR. Molecular Biology Reports 51:162 https://doi.org/10.1007/s11033-023-09138-1
2023
Gidhi A, Mohapatra A, Fatima M, Jha SK, Kumar M, Mukhopadhyay K* (2023) Insights of Auxin signaling F-box genes in wheat (Triticum aestivum L.) and their dynamic expression during the leaf rust infection. Protoplasma 260(3):723-739. 10.1007/s00709-022-01808-4
Kumari P, Misra M, Mukhopadhyay K, Chattopadhyay S (2023) In-silico identification and characterization of lipase gene sequences present in hexaploid wheat. South African Journal of Botany, 161: 482-488. DOI: 10.1016/j.sajb.2023.08.038
2022
Jha P, Ghosh S, Vidyarthi AS, Singh J, Mukhopadhyay K, Prasad R (2022) Unravelling the microbial community structure and function of coal-bed methane producing formation water of Jharia coal mines using metagenomics approach. Fuel 123459 https://doi.org/10.1016/j.fuel.2022.123459
2021
Gidhi A, Kumar M, Mukhopadhyay K* (2021) The Auxin Response Factor gene family in wheat (Triticum aestivum L.): Genome-wide identification, characterization and expression analyses in response to leaf rust. South African Journal of Botany, 140: 312-325. DOI:10.1016/j.sajb.2020.06.017
Singh P, Mukhopadhyay K* (2021) Comprehensive molecular dissection of TIFY Transcription factors reveal their dynamic responses to biotic and abiotic stress in wheat (Triticum aestivum L.). Scientific Reports 11:9739 https://doi.org/10.1038/s41598-021-87722-w
Adhikari M, Mukhopadhyay K, Sarkar B (2021) Flavonoid-rich wheatgrass (Triticum aestivum L.) diet attenuates diabetes by modulating antioxidant genes in streptozotocin-induced diabetic rats. Journal of Food Biochemistry 45(4): e13643
DOI: 10.1111/jfbc.13643
Roy Sarkar S, Mitra Mazumder P, Chatterjee K, Sarkar A, Adhikary M, Mukhopadhyay K, Banerjee S. (2021) Saccharomyces boulardii ameliorates gut dysbiosis associated cognitive decline. Physiol Behav. 236:113411. doi: 10.1016/j.physbeh.2021.113411.
2020
Dutta S, Afreen U, Kumar M, Mukhopadhyay K* (2020) Small RNA in tolerating various biotic stresses. In: Guleria P and Kumar V (ed.) Plant Small RNA, 1st Edition, Biogenesis, Regulation and Application. ELSEVIER BV. Published: 1st February 2020. DOI: 10.1016/B978-0-12-817112-7.00008-0
Singh A, Ghosh Sachan S, Mukhopadhyay K, Kumar M, Sachan A (2020) A rapid and simple ultra-high-performance liquid chromatography method for the simultaneous determination of methoxyphenol derivatives involved in the eugenol catabolic pathway. Journal of Separation Science. 43(5): 848-1018. DOI: 10.1002/jssc.201900939
Gaggar P, Kumar M, Mukhopadhyay K* (2020) Genome-scale identification, in silico characterization and interaction study between wheat SNARE and NPSN gene families involved in vesicular transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2020.2981896
Gidhi A, Kumar M, Mukhopadhyay K* (2020) The Auxin Response Factor gene family in wheat (Triticum aestivum L.): Genome-wide identification, characterization and expression analyses in response to leaf rust. South African Journal of Botany. DOI:1 0.1016/j.sajb.2020.06.017
2019
Dutta S, Kumar M, Mukhopadhyay K* (2019) Identification and Validation of Leaf Rust Responsive Wheat isomiRs and their Target Genes in both Wheat and Puccinia triticina. Tropical Plant Biology DOI: https://doi.org/10.1007/s12042-019-09235-1
Dutta S, Kumar M, Mukhopadhyay K* (2019) Development of a rapid RNA extraction procedure from urediniospores of the leaf rust fungus, Puccinia triticina. Journal of Microbiological Methods 158:1-5 DOI: 10.1016/j.mimet.2019.01.010 IF 1.701
Dutta S, Jha S, Prabhu KV, Kumar M, Mukhopadhyay K* (2019) Leaf rust (Puccinia triticina) mediated RNAi in wheat (Triticum aestivum L.) prompting host susceptibility. Functional & Integrative Genomics 19(3):437-452 DOI:10.1007/s10142-019-00655-6 IF 3.889
Adya R, Mohan M, Mukhopadhyay K., Poddar R (2019) Investigation of Puccinia triticina contagion on wheat leaves using swept source optical coherence tomography. Optik 178: 932-937 DOI: 10.1016/j.ijleo.2018.10.005
Sharan S, Sarin NB, Mukhopadhyay K* (2019) Elicitor-mediated enhanced accumulation of ursolic acid and eugenol in hairy root cultures of Ocimum tenuiflorum L. is age, dose, and duration dependent. South African Journal of Botany 124: 199-210 DOI: 10.1016/j.sajb.2019.05.009 IF 1.442
2018
Singh A, Mukhopadhyay K, Ghosh Sachan S (2018) Biotransformation of eugenol to vanillin by a novel strain Bacillus safensis SMS1003. Biocatalysis and Biotransformation 37(4): 291-303 DOI: 10.1080/10242422.2018.1544245
Sarkar B, Vyas P, Haque I, Mukhopadhyay K (2018) A rapid UPLC method for simultaneous separation and detection of anthocyanidins from Ocimum, Hibiscus and Syzygium species and estimation of their antioxidant activity. Journal of Liquid Chromatography & Related Technologies, 41:10, 658-667, DOI: 10.1080/10826076.2018.1506932
Satapathy L, Kumar D, Kumar M, Mukhopadhyay K (2018) Functional and DNA–protein binding studies of WRKY transcription factors and their expression analysis in response to biotic and abiotic stress in wheat (Triticum aestivum L.) 3Biotech 8(1):40 DOI: 10.1007/s13205-017-1064-3.
Singh S., Sarkar B., Mukhopadhyay K., Banerjee M., Kumar M. (2018) Antioxidants, DNA Damage Protective Properties and Antibacterial Activity of Leaf Extract of Phlogacanthus thyrsiflorus Nees. Asian Jr. of Microbiol. Biotech. Env. Sc. 20: S145-S151
2017
Singh D, Kumar D, Satapathy L, Pathak J, Chandra S, Riaz A, Bhaganagre G, Dhariwal R, Kumar M, Prabhu KV, Balyan HS, Gupta PK, Mukhopadhyay K (2017) Insights of Lr28 mediated wheat leaf rust resistance: Transcriptomic approach. Gene 637: 72–89 DOI: 10.1016/j.gene.2017.09.028 IF: 2.015
Dutta S, Kumar D, Jha S, Prabhu KV, Kumar M, Mukhopadhyay K* (2017) Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.) Planta 246:939–957 DOI: 10.1007/s00425-017-2744-2 IF: 3.347
Chandra S, Singh D, Pathak J, Kumari S, Kumar M, Poddar R, Balyan HS, Prabhu KV, Gupta PK, Mukhopadhyay K* (2017) SNP discovery from next-generation transcriptome sequencing data and their validation using KASP assay in wheat (Triticum aestivum L.) Molecular Breeding 37: 92 DOI: 10.1007/s11032-017-0696-7 IF: 2.465
Chandra S, Kazmi AZ, Ahmed Z, Roychowdhury G, Kumari V, Kumar M, Mukhopadhyay K* (2017) Genome-wide identification and characterization of NB-ARC resistant genes in wheat (Triticum aestivum L.) and their expression during leaf rust infection. Plant Cell Reports 36:1097–1112 DOI: 10.1007/s00299-017-2141-0 IF: 3.08
Vyas P and Mukhopadhyay K* (2017) Elicitation of phenylpropanoids and expression analysis of PAL gene in suspension cell culture of Ocimum tenuiflorum L. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences DOI: 10.1007/s40011-017-0858-8 2013 IF 0.396
Chandra S., Haldar P., Kumar M., Mukhopadhyay K* (2017) Genome-wide identification, cloning and characterization of SNARE genes and their role against leaf rust in bread wheat (Triticum aestivum L.). Agri Gene 3:12-20
Kumar D, Dutta S, Singh D, Prabhu KV, Kumar M, Mukhopadhyay K* (2017) Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis. Planta (2017) 245:161–182 DOI 10.1007/s00425-016-2600-9 IF: 3.347
2016
Chandra S, Singh D, Pathak J, Kumari S, Kumar M, Poddar R, Balyan HS, Gupta PK, Prabhu KV, Mukhopadhyay K* (2016). De novo assembled wheat transcriptomes delineate differentially expressed host genes in response to leaf rust infection. PLoS ONE 11(2): e0148453. Doi:10.1371/journal.pone.0148453 IF: 3.234
2015
Dhariwal R, Gahlaut V, RG Bhaganagare, Singh D, Mathur S, Vyas S, Bandopadhyay R, Khurana JP, Tyagi AK, Prabhu KV, Mukhopadhyay K, Balyan H S, Gupta P K (2015) Stage-specific reprogramming of gene expression characterizes Lr48-mediated adult plant leaf rust resistance in wheat. Funct Integr Genomics 15(2):233-45 DOI 10.1007/s10142-014-0416-x IF: 2.265
Kumar A, Bhaskar A, Chandra S, Sasmal D., Mukhopadhyay K, Sharma N (2015) Mechanism of Deltamethrin induced Immunotoxicity: Current and Future Perspectives. Receptors & Clinical Investigation 2015; 2: e578. DOI: 10.14800/rci.578; © 2015
Kumar A, Bhaskar A, Chandra S, Sasmal D, Mukhopadhyay K, Sharma N (2015) Mechanism of Deltamethrin induced Immunotoxicity: Current and Future Perspectives. Receptors & Clinical Investigation 2015; 2: e578. doi: 10.14800/rci.578
2014
Kumar D, Singh D, Kanodia P, Prabhu K V, Kumar M, Mukhopadhyay K* (2014) Discovery of novel leaf rust responsive microRNAs in wheat and prediction of their target genes. Journal of Nucleic Acids Article ID 570176 IF: 2.122
Kumar A, Sasmal D, Bhaskar A, Mukhopadhyay K, Thakur A, Sharma N (2014) Deltamethrin-Induced Oxidative Stress and Mitochondrial Caspase-Dependent Signaling Pathways in Murine Splenocytes Environmental Toxicology 31(7):808-819 DOI: 10.1002/tox.22091 IF: 2.868
Kamal S R, Rani D, Mukhopadhyay K, Banerjee M (2014) Development of hairy root culture system of Phlogacanthus thyrsiflorus Nees. Journal of Applied Research on Medicinal and Aromatic Plants. 1 (3): 107–112 DOI: 10.1016/j.jarmap.2014.08.001
Satapathy L, Singh D, Ranjan P, Kumar D, Kumar M, Prabhu K V and Mukhopadhyay K* (2014) Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling. Molecular Genetics and Genomics 289 (6) 1289-1306. DOI: 10.1007/s00438-014-0890-9. IF: 2.622
Kumar D, Kapoor A, Singh D, Satapathy L, Singh A K, Kumar M, Prabhu KV, Mukhopadhyay K* (2014) Functional characterization of a WRKY Transcription Factor of wheat and its expression analysis during leaf rust pathogenesis Functional Plant Biology 41: 1295–1309 http://dx.doi.org/10.107/FP14077. IF: 3.145
Vyas P, Haque I, Kumar M, Mukhopadhyay K* (2014) Photocontrol of differential gene expression and alterations in foliar anthocyanin accumulation: a comparative study using red and green forma Ocimum tenuiflorum. Acta Physiologiae Plantarum 36:2091-2102 DOI: 10.1007/s11738-014-1586-9 IF: 1.563
Sarkar B, Kumar D, Sasmal D, Mukhopadhyay K* (2014) Antioxidant and DNA damage protective properties of anthocyanin rich extracts from Hibiscus and Ocimum: a comparative study. Natural Product Research. 28(17):1393-1398 DOI: 10.1080/14786419.2014.904309 IF: 0.919
Vyas P. Mukhopadhyay K* (2014) Development of a rapid and high frequency Agrobacterium rhizogenes mediated transformation protocol for Ocimum tenuiflorum. Biologia (Section Botany) 69/6: 765—770 DOI: 10.2478/s11756-014-0375-7 IF: 1.555
Renu IK, Haque I, Kumar M, Poddar R, Bandopadhyay R, Rai A, Mukhopadhyay K* (2014) Characterization and functional analysis of Eugenol O-methyltransferase gene reveal metabolite shifts, chemotype specific differential expression and developmental regulation in Ocimum tenuiflorum L. Mol Biol Rep 41:1857–1870 DOI 10.1007/s11033-014-3035-7-7 IF: 2.024
2013
Shrivastava S, Shukla P, Deepalakshmi PD, Mukhopadhyay K* (2013) Characterization, cloning and functional expression of novel xylanase from Thermomyces lanuginosus SS-8 isolated from self-heating plant wreckage material. World J Microbiol Biotechnol 29(12):2407-15 DOI 10.1007/s11274-013-1409-y. IF: 1.532
Paramaguru RKD, Mitra Mazumder P, Sasmal D, Kumar D, Mukhopadhyay K* (2013) Evaluation of antioxidant and DNA nicking potential along with HPTLC ?ngerprint analysis of different parts of Pterospermum acerifolium (L.) Willd. Free Radicals and Antioxidants 3: 100-106 doi. /10.1016/j.fra.2013.05.002. IF: 1.873
Chaudhary B and Mukhopadhyay K* (2013) Solvent optimization for anthocyanin extraction from Syzygium cumini L. Skeels using response surface methodology International Journal of Food Sciences and Nutrition. 64(3):363-371. doi: 10.3109/09637486.2012.738647. IF: 1.451
2012
Singh D, Bhaganagare G, Bandopadhyay R, Prabhu KV, Gupta PK and Mukhopadhyay K* (2012) Targeted spatio-temporal expression-based characterization of state of infection and time-point of maximum defense in wheat NILs during leaf rust infection. Mol Biol Rep 39:9373–9382 DOI 10.1007/s11033-012-1801-y. IF: 2.024
Mukhopadhyay K.*, Haque I., Bandopadhyay R., Covert S. and Porter D (2012) AFLP based assessment of genetic relationships among shiitake (Lentinula ssp.) mushrooms. Mol Biol Rep DOI 10.1007/s11033-011-1420-z IF: 2.024
2011
Shrivastava S., Shukla P. and Mukhopadhyay K* (2011) Purification and preliminary characterization of a xylanase from Thermomyces lanuginosus strain SS-8. 3 Biotech 1(4): 255–259 DOI: 10.1007/s13205-011-0032-6 IF: 0.992
2010
Haque I., Bandopadhyay R. and Mukhopadhyay K* (2010) Population genetic structure of the endangered and endemic medicinal plant Commiphora wightii. Mol Biol Rep 37(2):847-854 DOI 10.1007/s11033-009-9661-9 IF: 2.024
2009
Shrivastava S., Poddar R., Shukla P. and Mukhopadhyay K* (2009) Study of codon bias perspective of fungal xylanase gene by multivariate analysis. Bioinformation, 3(10): 425-429.
Haque I., Kumar M. and Mukhopadhyay K* (2009) Rapid and simultaneous determination of medicinally important E- and Z-guggulsterone from oleogum-resins of Commiphora wightii by ultra-performance liquid chromatography-tandem mass spectrometry. Chromatographia 70: 1613-1619. DOI: 10.1365/s10337-009-1347-x. IF: 1.332
Haque I., Bandopadhyay R. and Mukhopadhyay K* (2009) Intraspecific variation in Commiphora wightii populations based on internal transcribed spacer (ITS1-5.8S-ITS2) sequences of rDNA. Diversity 1, 89-101; doi:10.3390/d1020089
2008
Haque I., Bandopadhyay R. and Mukhopadhyay K* (2008) An optimized protocol for fast genomic DNA isolation from high secondary metabolites and gum containing plants. Asian J Plant Sci 7(3): 304-308. DOI: 10.3923/ajps.2008.304.308
Shrivastava S., Shukla P. and Mukhopadhyay K* (2008) Correlative characterization of changes in hyphal morphology during xylanase production in submerged culture by Thermomyces lanuginosus SS-8. The Internet J of Microbiol Volume 4, Number 2.
Earlier
Bandopadhyay R., Mukhopadhyay K., Lavanya C. and Chaudhuri R K. (2007) Clarity in castorbean RAPD profiles after mild NaOH treatment of genomic DNAs. J Bot Soc Bengal 61(2): 153-156.
Mukhopadhyay K., Bacon C., Peck H.D and Datta N. (1996). Identification and characterization of bacterial endophytes of rice. Mycopathologia 134:151-159.
Mukhopadhyay K. and Roy S.C. (1994) In vitro induction of ‘runner’ – a quick method of micropropagation in orchid Scientia Horticulturae, 56: 331-337.
Book Chapters
Vyas P., Chaudhary B., Mukhopadhyay K. and Bandopadhyay R. (2009). Anthocyanins: looking beyond colors. (Chapter7) In: Advances in Biotechnology, Eds: Bhowmik P, Basu SK and Goyal A; Bentham Science Publishers Ltd. Oak Park, IL, USA. Pp 152-184
Bandopadhyay R., Haque I., Singh D. and Mukhopadhyay K. (2009). Levels and stability of expression of transgenes. In: Transgenic Crop Plants. Vol-I, Principles and Development. Eds: Chittaranjan Kole, Charles H. Michler, Albert G. Abbott and Timothy C. Hall, Springer-Verlag GmbH, Berlin Heidelberg, Germany. (In Press).
R.K. Chaudhuri, K. Mukhopadhyay, I. Chaudhuri and R. Bandopadhyay (2004). Plant MADS-box genes: a review with a reference on inflorescence development in Ricinus communis L. In: Recent Advances in Life Science Ed: Nandan Bhattacharya; Research Signpost, pp. 25-43.
* - Corresponding Author
Proceedings International Symposia
Kumar D, Kumar M and Mukhopadhyay K (2014). Non-coding regulatory RNAs and crop improvement. National Symposium on Advances in Biotechnology for Crop Improvement. 12 July 2014. Eternal university, Baru Sahib, H. P.
Kumar D, Kapoor A, Satapathy L, Kumar M and Mukhopadhyay K (2013). Functional characterization of a wheat WRKY transcription factor with a protective role in leaf rust pathogenesis and AFM imaging of the protein-DNA complex. Poster Presented in BGRI Technical Workshop 2013, held in New Delhi, India.
Singh D, Bhaganagare G, Kumar M, Bandopadhyay R, Prabhu KV, Balyan H S, Gupta PK and Mukhopadhyay K. Comprehensive transcriptome characterization of wheat NILs in response to leaf rust disease using next generation SOLiD-SAGE sequence data. 13th International Cereal Rust and Powdery Mildew Conference, 28 Aug to 01 Sept, 2012. Beijing, China.
Kumar D, Kapoor A, Mukhopadhyay K and Kumar M. Molecular characterization and protein- DNA interaction analysis of a WRKY transcription factor during leaf rust infection in wheat. BGRI 2012 Technical Workshop 01 to 04 Sept 2012. Beijing, China.
I. Haque, R. Bandopadhyay & K. Mukhopadhyay (2007) Molecular Analysis of Population Structure of Guggul (Commiphora wightii) Biotypes: A Rare and Endangered Medicinal Plant Endemic to India. Plant and Animal Genome International Conference (PAG XV), San Diego, California, USA; Jan 11 – 17, 2007.
V. Paritosh, I. Haque, I. K Renu, M. Kumar, R. Bandopadhyay & K. Mukhopadhyay (2007) Assessment of Genetic Variation Among the Chemotypes of Tulsi: The Indian Holy Basil Plant. Plant and Animal Genome International Conference (PAG XV), San Diego, California, USA; Jan 11 – 17, 2007.